Python variant-calling

Open-source Python projects categorized as variant-calling
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Topics: Variants Genomics Deep Learning computational-biology Bioinformatics
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Top 3 Python variant-calling Projects

  • pepper

    PEPPER-Margin-DeepVariant (by kishwarshafin)

  • Clairvoyante

    Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

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  • arcsv

    Complex structural variant detection from WGS data

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

Python variant-calling related posts

  • Installing packages for python2 with pip when they're already installed for python3

    1 project | /r/learnpython | 29 Jun 2021

Index

What are some of the best open-source variant-calling projects in Python? This list will help you:

Project Stars
1 pepper 231
2 Clairvoyante 172
3 arcsv 21

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