Clairvoyante

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing (by aquaskyline)
Add to my DEV experience variant-calling Deep Learning Bioinformatics computational-biology
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Clairvoyante reviews and mentions

Posts with mentions or reviews of Clairvoyante. We have used some of these posts to build our list of alternatives and similar projects.
  • Installing packages for python2 with pip when they're already installed for python3
    1 project | /r/learnpython | 29 Jun 2021
    Hi! This might be a dumb question, but I am stuck at this problem. I am using Ubuntu 20.04 with Anaconda and I have both Python 2.7 and 3.7 on my system. I am trying to use this tool: https://github.com/aquaskyline/Clairvoyante but I am running into problems that there are packages, such as numpy and intervaltree that are installed for python3 but not for python2. When I run a python2 script that requires this package, I am getting errors like

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1
172
0.0
5 months ago

aquaskyline/Clairvoyante is an open source project licensed under BSD 3-clause "New" or "Revised" License which is an OSI approved license.

The primary programming language of Clairvoyante is Python.

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