Clairvoyante VS pepper

Compare Clairvoyante vs pepper and see what are their differences.

Clairvoyante

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing (by aquaskyline)
variant-calling Deep Learning Bioinformatics computational-biology
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pepper

PEPPER-Margin-DeepVariant (by kishwarshafin)
nanopore long-reads oxford-nanopore variant-calling genome-variation assembly-polishing pacbio-ccs Variants
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Clairvoyante pepper
1 1
172 231
- -
0.0 0.0
5 months ago 4 months ago
Python Python
BSD 3-clause "New" or "Revised" License MIT License
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Clairvoyante

Posts with mentions or reviews of Clairvoyante. We have used some of these posts to build our list of alternatives and similar projects.
  • Installing packages for python2 with pip when they're already installed for python3
    1 project | /r/learnpython | 29 Jun 2021
    Hi! This might be a dumb question, but I am stuck at this problem. I am using Ubuntu 20.04 with Anaconda and I have both Python 2.7 and 3.7 on my system. I am trying to use this tool: https://github.com/aquaskyline/Clairvoyante but I am running into problems that there are packages, such as numpy and intervaltree that are installed for python3 but not for python2. When I run a python2 script that requires this package, I am getting errors like

pepper

Posts with mentions or reviews of pepper. We have used some of these posts to build our list of alternatives and similar projects.

What are some alternatives?

When comparing Clairvoyante and pepper you can also consider the following projects:

dance - DANCE: a deep learning library and benchmark platform for single-cell analysis

pipeline-structural-variation - Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data

OpenChem - OpenChem: Deep Learning toolkit for Computational Chemistry and Drug Design Research

CNApy - An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

dash-cytoscape - Interactive network visualization in Python and Dash, powered by Cytoscape.js

biotite - A comprehensive library for computational molecular biology

metaGEM - :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

Clairvoyante vs dance pepper vs pipeline-structural-variation Clairvoyante vs OpenChem Clairvoyante vs CNApy Clairvoyante vs dash-cytoscape Clairvoyante vs biotite Clairvoyante vs metaGEM