CancerDB VS sarek

Compare CancerDB vs sarek and see what are their differences.

CancerDB

CancerDB: a computable encyclopedia about cancer. (by breck7)
cancer Data knowledge-graph
Source Code
cancerdb.com
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sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing (by nf-core)
nextflow Workflow Pipeline Bioinformatics Genomics cancer next-generation-sequencing Conda reproducible-research Containers germline somatic variant-calling nf-core gatk4 Annotation whole-genome-sequencing whole-exome-sequencing pre-processing target-panels
Source Code
nf-co.re
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CancerDB sarek
12 5
23 333
- 4.2%
5.8 9.8
2 months ago 3 days ago
JavaScript Nextflow
- MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

CancerDB

Posts with mentions or reviews of CancerDB. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-03-15.

sarek

Posts with mentions or reviews of sarek. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-03-11.

What are some alternatives?

When comparing CancerDB and sarek you can also consider the following projects:

breckyunits.com - Breck Yunits' Blog

GATK - Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices

scroll - Tools for thought. An extensible alternative to Markdown.

galaxy - Data intensive science for everyone.

pldb - PLDB: a Programming Language Database. A computable encyclopedia about programming languages.

rnaseq-nf - A proof of concept of RNAseq pipeline

MusicOfAPeople.com - Music for the people by the people. #BuildPublicDomain

mag - Assembly and binning of metagenomes

30000hours - How many hours have you spent practicing programming?

rnatoy - A proof of concept RNA-Seq pipeline with Nextflow

configs - Config files used to define parameters specific to compute environments at different Institutions

patterns - A curated collection of Nextflow implementation patterns

CancerDB vs breckyunits.com sarek vs GATK CancerDB vs scroll sarek vs galaxy CancerDB vs pldb sarek vs rnaseq-nf CancerDB vs MusicOfAPeople.com sarek vs mag CancerDB vs 30000hours sarek vs rnatoy sarek vs configs sarek vs patterns