What methods (conda installable only please) can you use to determine the complexity of a fastq file? (e.g., kmer analysis)

This page summarizes the projects mentioned and recommended in the original post on /r/bioinformatics
fastq qc preprocessing Filtering Adapter

InfluxDB - Power Real-Time Data Analytics at Scale
Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
www.influxdata.com
featured
SaaSHub - Software Alternatives and Reviews
SaaSHub helps you find the best software and product alternatives
www.saashub.com
featured

  • fastp

    An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

    • I don't know if this fits exactly what you need, but I'm using fastp to check my fastq.gz files lately: https://github.com/OpenGene/fastp. You can install it via conda.

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

    InfluxDB logo
NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a more popular project.

Suggest a related project

Related posts

  • Low-complexity sequence filtering tool

    2 projects | /r/bioinformatics | 15 Jun 2023

  • Can you evaluate my pipeline?

    2 projects | /r/bioinformatics | 6 Jun 2023

  • Current QC tools for short read and long read sequencing

    2 projects | /r/bioinformatics | 3 Apr 2023

  • A tool to count basepair in fastq file

    2 projects | /r/bioinformatics | 31 Aug 2021

  • Illumina adapters and quality trimming

    2 projects | /r/bioinformatics | 4 Jul 2023