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C++ fastq Projects
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fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
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seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
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WorkOS
The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.
fastp + multiQC + Salmon + DESeq2 all some nextflow workflow. It is a good exercise (not complicated) to create the pipeline from scratch the first time to properly understand each tool.
NOTE:
The open source projects on this list are ordered by number of github stars.
The number of mentions indicates repo mentiontions in the last 12 Months or
since we started tracking (Dec 2020).
C++ fastq related posts
- NHI Genome Studies: Mexico Govt Sept 12 Congressional hearing
- Low-complexity sequence filtering tool
- Can you evaluate my pipeline?
- Current QC tools for short read and long read sequencing
- Qurstion about automating trimming process
- What methods (conda installable only please) can you use to determine the complexity of a fastq file? (e.g., kmer analysis)
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