Current QC tools for short read and long read sequencing

• fastp

  9 1,768 4.7 C++

  An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

  

I generally use fastp as an all-in-one tool for short reads: https://github.com/OpenGene/fastp

• NanoPlot

  1 382 5.9 Python

  Plotting scripts for long read sequencing data

• InfluxDB

  www.influxdata.com sponsored

  Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

  

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