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C++ qc Projects
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fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
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InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
fastp + multiQC + Salmon + DESeq2 all some nextflow workflow. It is a good exercise (not complicated) to create the pipeline from scratch the first time to properly understand each tool.
NOTE:
The open source projects on this list are ordered by number of github stars.
The number of mentions indicates repo mentiontions in the last 12 Months or
since we started tracking (Dec 2020).
C++ qc related posts
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NHI Genome Studies: Mexico Govt Sept 12 Congressional hearing
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Low-complexity sequence filtering tool
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Can you evaluate my pipeline?
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Current QC tools for short read and long read sequencing
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Qurstion about automating trimming process
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What methods (conda installable only please) can you use to determine the complexity of a fastq file? (e.g., kmer analysis)
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A note from our sponsor - SaaSHub
www.saashub.com | 3 May 2024
Index
| Project | Stars | |
|---|---|---|
| 1 | fastp | 1,775 |
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