Illumina adapters and quality trimming

This page summarizes the projects mentioned and recommended in the original post on /r/bioinformatics
Bioinformatics fastq sequence-analysis qc preprocessing

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  • seqtk

    Toolkit for processing sequences in FASTA/Q formats

    • seqtk: A lightweight and versatile tool for processing FASTQ and FASTA files. https://github.com/lh3/seqtk

  • fastp

    An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

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NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a more popular project.

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