C sequence-analysis

Open-source C projects categorized as sequence-analysis
Bioinformatics

Top 3 C sequence-analysis Projects

sequence-analysis
  1. seqtk

    Toolkit for processing sequences in FASTA/Q formats

  2. CodeRabbit

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  3. bioawk

    BWK awk modified for biological data

    Project mention: Bioawk: Awk Modified for Biological Data | news.ycombinator.com | 2024-03-31
  4. readfq

    Fast multi-line FASTA/Q reader in several programming languages

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

C sequence-analysis discussion

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C sequence-analysis related posts

  • Bioawk: Awk Modified for Biological Data

    1 project | news.ycombinator.com | 31 Mar 2024
  • Illumina adapters and quality trimming

    2 projects | /r/bioinformatics | 4 Jul 2023
  • looking for a tool to filter non-coding regions/excise ORFs from a draft assembly

    2 projects | /r/bioinformatics | 15 Jun 2023
  • Help with understanding awk code

    2 projects | /r/bash | 19 May 2023
  • Any links to R-scripts for common NGS pipelines?

    2 projects | /r/bioinformatics | 11 May 2023
  • Is BioAwk frequently used, or even useful?

    2 projects | /r/bioinformatics | 5 May 2023
  • What are the most useful cutting edge tools I should learn for bioinformatics?

    3 projects | /r/bioinformatics | 26 Apr 2023
  • A note from our sponsor - CodeRabbit
    coderabbit.ai | 22 Mar 2025
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Index

What are some of the best open-source sequence-analysis projects in C? This list will help you:

# Project Stars
1 seqtk 1,439
2 bioawk 601
3 readfq 174

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