looking for a tool to filter non-coding regions/excise ORFs from a draft assembly

This page summarizes the projects mentioned and recommended in the original post on /r/bioinformatics
Bioinformatics sequence-analysis

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  • seqtk

    Toolkit for processing sequences in FASTA/Q formats

    • Perhaps seqtk could be helpful https://github.com/lh3/seqtk

  • Synthetic_In_Silico_Genome_Generator

    A library for generating and modifying genomes for the purposes of testing Bioinformatics software and methods.

    • That said, if you really insist on trying to use some, you could probably repurpose an old script of mine for Step 2. (https://github.com/AHCChan/Synthetic_In_Silico_Genome_Generator/blob/main/Sequence_Extractor.py)

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

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NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a more popular project.

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