Readfq Alternatives
Similar projects and alternatives to readfq based on common topics and language
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fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
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InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
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SaaSHub
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NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a better readfq alternative or higher similarity.
readfq reviews and mentions
Posts with mentions or reviews of readfq.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-04-08.
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Training resources for Biopython?
Heng Li has a FASTQ/FASTA reader that I generally cut and paste into my code rather than use Biopython. Biopython has a very rich model for sequence data but you generally don't need 90% of it and it comes at a significant performance cost.
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Extract sequences given FASTA + list of starts and ends?
Just slap Heng Li's FASTQ/A parsing function in, load in your read, then loop through your coordinates and slice the sequence.
Stats
Basic readfq repo stats
2
164
0.0
almost 3 years ago
The primary programming language of readfq is C.
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