zarp VS atlas

Compare zarp vs atlas and see what are their differences.

zarp

The Zavolab Automated RNA-seq Pipeline (by zavolanlab)
Bioinformatics rna-seq rna-seq-pipeline Snakemake
Source Code
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atlas

ATLAS - Three commands to start analyzing your metagenome data (by metagenome-atlas)
metagenomics Annotation Snakemake Assembly genomic-binning functional-annotation taxonomic-classifications
Source Code
metagenome-atlas.github.io
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zarp atlas
1 2
29 348
- 1.7%
7.2 8.9
2 months ago 17 days ago
Python Python
Apache License 2.0 BSD 3-clause "New" or "Revised" License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

zarp

Posts with mentions or reviews of zarp. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-05-11.

atlas

Posts with mentions or reviews of atlas. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-08-23.

What are some alternatives?

When comparing zarp and atlas you can also consider the following projects:

RNA-seq-analysis - RNAseq analysis notes from Ming Tang

kraken-biom - Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

bioawk - BWK awk modified for biological data

pypsa-eur - PyPSA-Eur: A Sector-Coupled Open Optimisation Model of the European Energy System

sv-callers - Snakemake-based workflow for detecting structural variants in genomic data

GraphBin2 - ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs

metaGEM - :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

chipseq-smk-pipeline - ChIP-Seq processing pipeline on snakemake

PyDESeq2 - A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

eggnog-mapper - Fast genome-wide functional annotation through orthology assignment

bioinformatics - :microscope: Path to a free self-taught education in Bioinformatics!

biopython-coronavirus - Biopython Jupyter Notebook tutorial to characterize a small genome

zarp vs RNA-seq-analysis atlas vs kraken-biom zarp vs bioawk atlas vs pypsa-eur zarp vs sv-callers atlas vs GraphBin2 zarp vs metaGEM atlas vs chipseq-smk-pipeline zarp vs PyDESeq2 atlas vs eggnog-mapper atlas vs bioinformatics atlas vs biopython-coronavirus