atlas
GraphBin2
atlas | GraphBin2 | |
---|---|---|
2 | 1 | |
346 | 27 | |
1.2% | - | |
9.3 | 7.8 | |
3 months ago | 13 days ago | |
Python | Python | |
BSD 3-clause "New" or "Revised" License | BSD 3-clause "New" or "Revised" License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
atlas
- Resources to learn genetic data manipulation basics?
-
Is it possible to calculate relative abundance of microorganisms in a community through shotgun-metagenomics?
You might want to check Atlas, an assembly/binning based pipeline for metagenomics data Publication Github
GraphBin2
What are some alternatives?
kraken-biom - Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).
metaGEM - :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
pypsa-eur - PyPSA-Eur: A Sector-Coupled Open Optimisation Model of the European Energy System
zarp - The Zavolab Automated RNA-seq Pipeline
chipseq-smk-pipeline - ChIP-Seq processing pipeline on snakemake
eggnog-mapper - Fast genome-wide functional annotation through orthology assignment
bioinformatics - :microscope: Path to a free self-taught education in Bioinformatics!
biopython-coronavirus - Biopython Jupyter Notebook tutorial to characterize a small genome