Python binning

Open-source Python projects categorized as binning
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Topics: metagenomics Assembly contigs assembly-graphs Bioinformatics
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Python binning Projects

  • aviary

    A hybrid assembly and MAG recovery pipeline (and more!)

    • Project mention: what would you choose to detect specific genes in metagenomics data | /r/bioinformatics | 2023-06-12

    Aviary is a good binning pipeline (there are others available), though perhaps more geared towards prokaryotes.

  • GraphBin2

    ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

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NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

Python binning related posts

  • Why bother reconstructing MAGs ?

    2 projects | /r/bioinformatics | 11 Jan 2023

  • question about analysis of metagenome assembled genomes

    2 projects | /r/bioinformatics | 27 Sep 2022

Index

Project Stars
1 aviary 67
2 GraphBin2 27

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