atlas
bioinformatics
| atlas | bioinformatics | |
|---|---|---|
| 2 | 32 | |
| 346 | 4,987 | |
| 1.2% | - | |
| 9.3 | 3.2 | |
| 3 months ago | 28 days ago | |
| Python | ||
| BSD 3-clause "New" or "Revised" License | - |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
atlas
- Resources to learn genetic data manipulation basics?
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Is it possible to calculate relative abundance of microorganisms in a community through shotgun-metagenomics?
You might want to check Atlas, an assembly/binning based pipeline for metagenomics data Publication Github
bioinformatics
- Biostats training beyond university coursework
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Online Courses in Bioinformatics
hope this helps ✌🏾
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Beginner Learner
OSSU — Path to a free self-taught education in Bioinformatics
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Can anyone be a bioinformatician from online courses?
OSSU study plan for example https://github.com/ossu/bioinformatics
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Master's, PhD, or learning on my own
In trying to merge the skills I have, I'm currently making my way through OSSU/bioinformatics, which seems like a pretty solid self-teaching guide.
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Does this CS degree prepare you well for grad school?
If you are looking for an online post bacc to get into bioinformatics, then CU Boulder would probably be a better fit for you, or some kind of data science bootcamp. If you've already got the math and science down, then you don't really need an academic degree, you just need to learn how to code. You can also check out OSSU here: https://github.com/ossu/bioinformatics
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is this a good roadmap?
Looks good enough at a glance, but this https://github.com/ossu/bioinformatics is more complete and probably better
- can one learn bioinformatics independently?
- I’m thinking about applying and enrolling in the program, but I have a few questions.
- What free online course would you recommend? Strong interest in genetics but no background in informatics (or maths). Want to tinker with my WGS data in conjunction w/ online data sets.
What are some alternatives?
kraken-biom - Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).
data-science - :bar_chart: Path to a free self-taught education in Data Science!
pypsa-eur - PyPSA-Eur: A Sector-Coupled Open Optimisation Model of the European Energy System
Awesome-Bioinformatics - A curated list of awesome Bioinformatics libraries and software.
GraphBin2 - ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
textbook-curriculum - Ada Developers Academy Online Curriculum
zarp - The Zavolab Automated RNA-seq Pipeline
pythonidae - Curated decibans of scientific programming resources in Python.
chipseq-smk-pipeline - ChIP-Seq processing pipeline on snakemake
Bioinformatics-pipeline - Courses, tutorials and books that facilitate bioinformatics.
eggnog-mapper - Fast genome-wide functional annotation through orthology assignment
computer-science - :mortar_board: Path to a free self-taught education in Computer Science!