atlas VS eggnog-mapper

Compare atlas vs eggnog-mapper and see what are their differences.

atlas

ATLAS - Three commands to start analyzing your metagenome data (by metagenome-atlas)
metagenomics Annotation Snakemake Assembly genomic-binning functional-annotation taxonomic-classifications
Source Code
metagenome-atlas.github.io
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eggnog-mapper

Fast genome-wide functional annotation through orthology assignment (by eggnogdb)
Annotations orthology-assignments functional-annotation Genomics
Source Code
eggnog-mapper.embl.de
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atlas eggnog-mapper
2 1
346 531
1.2% 2.6%
9.3 4.3
3 months ago about 2 months ago
Python Python
BSD 3-clause "New" or "Revised" License GNU Affero General Public License v3.0
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

atlas

Posts with mentions or reviews of atlas. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-08-23.

eggnog-mapper

Posts with mentions or reviews of eggnog-mapper. We have used some of these posts to build our list of alternatives and similar projects.

What are some alternatives?

When comparing atlas and eggnog-mapper you can also consider the following projects:

kraken-biom - Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

ncbi-genome-download - Scripts to download genomes from the NCBI FTP servers

pypsa-eur - PyPSA-Eur: A Sector-Coupled Open Optimisation Model of the European Energy System

goatools - Python library to handle Gene Ontology (GO) terms

GraphBin2 - ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs

Hail - Cloud-native genomic dataframes and batch computing

zarp - The Zavolab Automated RNA-seq Pipeline

galaxy - Data intensive science for everyone.

chipseq-smk-pipeline - ChIP-Seq processing pipeline on snakemake

deepvariant - DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

bioinformatics - :microscope: Path to a free self-taught education in Bioinformatics!

biopython-coronavirus - Biopython Jupyter Notebook tutorial to characterize a small genome

atlas vs kraken-biom eggnog-mapper vs ncbi-genome-download atlas vs pypsa-eur eggnog-mapper vs goatools atlas vs GraphBin2 eggnog-mapper vs Hail atlas vs zarp eggnog-mapper vs galaxy atlas vs chipseq-smk-pipeline eggnog-mapper vs deepvariant atlas vs bioinformatics atlas vs biopython-coronavirus