webviz
gnomad-browser
webviz | gnomad-browser | |
---|---|---|
8 | 15 | |
1,931 | 78 | |
0.0% | - | |
0.0 | 9.7 | |
over 1 year ago | about 19 hours ago | |
JavaScript | TypeScript | |
Apache License 2.0 | MIT License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
webviz
-
Brainstorming ideas for a cloud/web based control system for construction robotics
For the web based part, in terms of integration with ROS RobotWebTools (especially with RoslibJS) and rosbridge cover already a lot, so maybe you may want to first check what's available there. Webviz is also a great web based tools with many components for visualisation.
-
Show HN: Zaplib – Speedup your web app with Rust and WASM
Hey HN, one of the creators here! I made it at Cruise because it was super painful to develop https://webviz.io with manual memory management (lots of ArrayBuffers), WebWorkers, etc. I thought that there must be a better way.
Very curious to hear stories from other folks building intensive stuff in the browser. How are you dealing with performance issues in Javascript? Have you tried using Rust or C++ with WebAssembly for parts of your apps? How did you make 2d/3d rendering faster? Would you want to use something like Zaplib?
-
Total noob with ROS, need to open a .bag file and extract info, how?
Webviz is a great tool. Just drag the .bag file onto the browser window and you can start viewing the data.
-
Full recording of Cruise's Under the Hood event
Webviz is actually open source for the most part. https://webviz.io
-
How to show the mapping of the ROS Robot to my webpage?
U can try https://webviz.io/ or https://foxglove.dev/
-
Ask HN: Who is hiring? (July 2021)
Cruise | Software Engineer | San Francisco, Seattle, or REMOTE | VISA acceptable | https://www.getcruise.com
Cruise is building the world’s most advanced, self-driving vehicles to safely connect people to the places, things, and experiences they care about. We believe self-driving vehicles will help save lives, reshape cities, give back time in transit, and restore freedom of movement for many.
I'm an engineering manager hiring specifically for the Webviz (http://webviz.io/) team. I'm looking for frontend engineers who want to make fast, beautiful browser-based visualizations of the car using WebGL, WASM and Javascript.
Much of the work that we do on this team is open-sourced (check out the code at https://github.com/cruise-automation/webviz). Cruise vehicles produce mountains of data; we have to visualize it in dozens of different ways at a high frame rate. We recently built a Javascript object proxy that wraps all of our input binary data in an object-like interface that only parses data on access, so that we can limit garbage collection pressure and improve our frame rate. If this kind of project sounds interesting, you might enjoy working on Webviz!
Reach out directly to me if you're interested in the above (open to associate/senior/staff levels), or if you have any questions about Cruise.
-
Foxglove Studio - new open source robotics visualization and debugging tool
PS - for those of you who have seen or used Webviz, Foxglove may look familiar. Some of our team previously worked on Webviz at Cruise, and we reused much of their code, although it has been heavily refactored, several new features added, and we have more coming soon.
gnomad-browser
- All identified polymorphisms in a given gene, how to find?
- AskScience AMA Series: We're human genetics researchers here to discuss connections between people in different geographical regions. Ask us anything!
-
Converting 23&Me raw data into a format usable by Admixtools 2
try one of these: GnomAD (https://gnomad.broadinstitute.org/) 1000 Genomes (http://browser.1000genomes.org) dbSNP (http://www.ncbi.nlm.nih.gov/snp)
-
What is the maximum number of human?
Maybe you can ask the opposite question; what are the bounds of of a functional human being. https://gnomad.broadinstitute.org/ GnomAD is a aggregation of healthy human genetic sequences which was primarily built on the aggregated control groups of many genetic sequencing studies. There are studies of this data analysing the co-occurrence of variants in gnomAD which may help.
-
Insights from personal sequencing data I can explore.
Maybe something like this? https://promethease.com/ Clinvar for variants that might be of clinical relevance. https://gnomad.broadinstitute.org/ for allele frequencies & some info about variants.
-
What are some non-pathogenic alleles of the SNCA gene, or how do I find them?
You could look at aggregation databases such as gnomad https://gnomad.broadinstitute.org/ anything with a frequency incompatible with the disease is likely non pathogenic
-
Ask HN: Who is hiring? (March 2022)
Broad Institute of MIT and Harvard | Cambridge, MA | Frontend Software Engineer | REMOTE or HYBRID (New England area)
We are hiring a frontend developer to help lead the next phase of the gnomAD browser, a web application for displaying the world's largest collection of human genome/exome sequences. https://gnomad.broadinstitute.org. Looking for applicants who are excited about data visualization and designing complex interfaces for scientific research.
Apply here: http://broad.io/cq7dw8
-
Ask HN: Who is hiring? (February 2022)
Broad Institute of MIT and Harvard | New England | Software Engineer | REMOTE/HYBRID
Our team is focused on building the tools necessary to visualize and interpret massive data sets of human genetic variation and functional genomic information. We have developed gnomAD (https://gnomad.broadinstitute.org), the world’s largest public reference dataset of human exomes and genomes. gnomAD has become one of the most widely used resources in the field, and is now the default reference database for virtually all clinical interpretation pipelines, as well as a standard analysis resource for a wide variety of genetic and biological studies. We estimate gnomAD has contributed to the clinical diagnosis of over 2 million patients with genetic disorders.
Your role will be to maintain the gnomAD browser, our open source web application for exploring gnomAD and related datasets, and develop new scientific functionality as we continue to grow to over 1 million human samples. You will work with a team of software engineers, computational biologists and clinical and research users to develop new features and visualizations that incorporate user feedback. Software engineering skills and an interest in user interface design and data visualization are key. Basic familiarity with genomics and DNA sequencing data is preferred, but not required. Most importantly, the ideal candidate will have enthusiasm for playing a critical role in a team-oriented project and learning new domains.
Minimum Requirements
- Ask HN: How to be my own genetic disease researcher for my partner?
-
How to check if a discovered mutation is novel or was discovered before ?
If you're talking about humans, start with gnomAD: https://gnomad.broadinstitute.org/
What are some alternatives?
studio - Robotics visualization and debugging
haystack - :mag: LLM orchestration framework to build customizable, production-ready LLM applications. Connect components (models, vector DBs, file converters) to pipelines or agents that can interact with your data. With advanced retrieval methods, it's best suited for building RAG, question answering, semantic search or conversational agent chatbots.
PlotJuggler - The Time Series Visualization Tool that you deserve.
metamask-extension - :globe_with_meridians: :electric_plug: The MetaMask browser extension enables browsing Ethereum blockchain enabled websites
streamlit - Streamlit — A faster way to build and share data apps.
aioli - Framework for building fast genomics web tools with WebAssembly and WebWorkers
rotki - A portfolio tracking, analytics, accounting and management application that protects your privacy
Baserow - Open source no-code database and Airtable alternative. Create your own online database without technical experience. Performant with high volumes of data, can be self hosted and supports plugins
FFMpeg-Online - This repository catalogs a list of FFMpeg commands for different situations. By https://hotpot.ai.
FrameworkBenchmarks - Source for the TechEmpower Framework Benchmarks project
tenzir - Open source security data pipelines.
threatbus - 🚌 Threat Bus – A threat intelligence dissemination layer for open-source security tools.