typedb-bio VS pygraft

Compare typedb-bio vs pygraft and see what are their differences.

typedb-bio

TypeDB Bio: Biomedical Knowledge Graph (by typedb-osi)
Bioinformatics knowledge-graph knowledge-base drug-discovery biomedical knowledge-discovery
Source Code
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pygraft

Configurable Generation of Synthetic Schemas and Knowledge Graphs at Your Fingertips (by nicolas-hbt)
data-generator graph-generator knowledge-base knowledge-graph ontology Schema Semantic Web ontology-generation Python synthetic-data synthetic-dataset-generation
Source Code
pygraft.readthedocs.io
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typedb-bio pygraft
1 1
73 639
- -
4.6 8.0
10 months ago 3 months ago
Python Python
- MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

typedb-bio

Posts with mentions or reviews of typedb-bio. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-06-10.
  • How Roche Discovered Novel Potential Gene Targets with TypeDB
    2 projects | dev.to | 10 Jun 2021
    For this purpose, David built out a set of rules and schema in TypeQL. Below is just a very small excerpt of how such data can be modelled — taken from BioGrakn-Covid, a Vaticle community-led project by Konrad Mysliwiec (Data Science Software Engineer, Roche). Note that this is a selected schema; the full schema can be found within the BioGrakn-Covid schema file.

pygraft

Posts with mentions or reviews of pygraft. We have used some of these posts to build our list of alternatives and similar projects.

What are some alternatives?

When comparing typedb-bio and pygraft you can also consider the following projects:

grakn - TypeDB: the polymorphic database powered by types

Tyche - A library for probabilistic reasoning and belief modelling in Python.

obsidian-garden - A knowledge management garden for https://obsidian.md, in which to grow your ideas

foodon - The core repository for the FOODON food ontology project. This holds the key classes of the ontology; larger files and the results of text-mining projects will be stored in other repos.

topic-db - TopicDB is a topic maps-based semantic graph store (using SQLite for persistence)

Yamale - A schema and validator for YAML.

codex - CoDEx: A set of knowledge graph Completion Datasets Extracted from Wikidata and Wikipedia

contextualise - Contextualise is an effective tool particularly suited for organising information-heavy projects and activities consisting of unstructured and widely diverse data and information resources

ckb - Contextual knowledge bases

scispacy - A full spaCy pipeline and models for scientific/biomedical documents.

discus - A data-centric AI package for ML/AI. Get the best high-quality data for the best results. Discord: https://discord.gg/t6ADqBKrdZ

typedb-bio vs grakn pygraft vs Tyche typedb-bio vs obsidian-garden pygraft vs foodon typedb-bio vs topic-db pygraft vs Yamale typedb-bio vs codex pygraft vs contextualise typedb-bio vs ckb pygraft vs topic-db typedb-bio vs scispacy pygraft vs discus