typedb-bio
TypeDB Bio: Biomedical Knowledge Graph (by typedb-osi)
ckb
Contextual knowledge bases (by raphaelsty)
Our great sponsors
| typedb-bio | ckb | |
|---|---|---|
| 1 | 3 | |
| 73 | 20 | |
| - | - | |
| 4.6 | 0.0 | |
| 10 months ago | almost 2 years ago | |
| Python | Python | |
| - | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
typedb-bio
Posts with mentions or reviews of typedb-bio.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-06-10.
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How Roche Discovered Novel Potential Gene Targets with TypeDB
For this purpose, David built out a set of rules and schema in TypeQL. Below is just a very small excerpt of how such data can be modelled — taken from BioGrakn-Covid, a Vaticle community-led project by Konrad Mysliwiec (Data Science Software Engineer, Roche). Note that this is a selected schema; the full schema can be found within the BioGrakn-Covid schema file.
ckb
Posts with mentions or reviews of ckb.
We have used some of these posts to build our list of alternatives
and similar projects.
What are some alternatives?
When comparing typedb-bio and ckb you can also consider the following projects:
grakn - TypeDB: the polymorphic database powered by types
topic-db - TopicDB is a topic maps-based semantic graph store (using SQLite for persistence)
obsidian-garden - A knowledge management garden for https://obsidian.md, in which to grow your ideas
SchemaGPT - Python library for RDF Schemas generation from prompts using GPT-3 magic 🪄🪄🪄
typedb-ml - TypeDB-ML is the Machine Learning integrations library for TypeDB
pygraft - Configurable Generation of Synthetic Schemas and Knowledge Graphs at Your Fingertips
DanNet - The Danish WordNet as an RDF graph.
codex - CoDEx: A set of knowledge graph Completion Datasets Extracted from Wikidata and Wikipedia
scispacy - A full spaCy pipeline and models for scientific/biomedical documents.