typedb-bio
TypeDB Bio: Biomedical Knowledge Graph (by typedb-osi)
topic-db
TopicDB is a topic maps-based semantic graph store (using SQLite for persistence) (by brettkromkamp)
Our great sponsors
| typedb-bio | topic-db | |
|---|---|---|
| 1 | 1 | |
| 73 | 249 | |
| - | - | |
| 4.6 | 1.7 | |
| 10 months ago | 12 days ago | |
| Python | Python | |
| - | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
typedb-bio
Posts with mentions or reviews of typedb-bio.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-06-10.
-
How Roche Discovered Novel Potential Gene Targets with TypeDB
For this purpose, David built out a set of rules and schema in TypeQL. Below is just a very small excerpt of how such data can be modelled — taken from BioGrakn-Covid, a Vaticle community-led project by Konrad Mysliwiec (Data Science Software Engineer, Roche). Note that this is a selected schema; the full schema can be found within the BioGrakn-Covid schema file.
topic-db
Posts with mentions or reviews of topic-db.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-06-10.
-
Contextualise: Structured Thinking
Contextualise is a simple but effective tool particularly suited for organising information-heavy projects and activities consisting of unstructured and widely diverse data and information resources: https://github.com/brettkromkamp/contextualise. Contextualise's main dependency is TopicDB, an open source topic maps-based graph store implemented in Python. The Contextualise web application is implemented with the Flask framework.
What are some alternatives?
When comparing typedb-bio and topic-db you can also consider the following projects:
grakn - TypeDB: the polymorphic database powered by types