codex
CoDEx: A set of knowledge graph Completion Datasets Extracted from Wikidata and Wikipedia (by tsafavi)
typedb-bio
TypeDB Bio: Biomedical Knowledge Graph (by typedb-osi)
| codex | typedb-bio | |
|---|---|---|
| 1 | 1 | |
| 136 | 73 | |
| - | - | |
| 0.0 | 4.6 | |
| over 1 year ago | 10 months ago | |
| Python | Python | |
| MIT License | - |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
codex
Posts with mentions or reviews of codex.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-09-21.
typedb-bio
Posts with mentions or reviews of typedb-bio.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-06-10.
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How Roche Discovered Novel Potential Gene Targets with TypeDB
For this purpose, David built out a set of rules and schema in TypeQL. Below is just a very small excerpt of how such data can be modelled — taken from BioGrakn-Covid, a Vaticle community-led project by Konrad Mysliwiec (Data Science Software Engineer, Roche). Note that this is a selected schema; the full schema can be found within the BioGrakn-Covid schema file.
What are some alternatives?
When comparing codex and typedb-bio you can also consider the following projects:
topic-db - TopicDB is a topic maps-based semantic graph store (using SQLite for persistence)
grakn - TypeDB: the polymorphic database powered by types
jRDF2Vec - A high-performance Java Implementation of RDF2Vec
obsidian-garden - A knowledge management garden for https://obsidian.md, in which to grow your ideas
pygraft - Configurable Generation of Synthetic Schemas and Knowledge Graphs at Your Fingertips
ckb - Contextual knowledge bases
scispacy - A full spaCy pipeline and models for scientific/biomedical documents.