qore
seq
| qore | seq | |
|---|---|---|
| 3 | 15 | |
| 56 | 634 | |
| - | - | |
| 9.6 | 0.7 | |
| 5 days ago | over 1 year ago | |
| C++ | C++ | |
| GNU General Public License v3.0 only | Apache License 2.0 |
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For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
qore
- Qore Programming Language
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Memory management in garbage collected languages
Qore has prompt collection - so deterministic GC, so the language can support destructors as well as automatic memory management.
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Java and CPython compatibility bridge
This is all accomplished using a third language called Qore that provides the functionality of a "language bridge" and also manages the references to data in each separate runtime. Because Qore has a deterministic garbage collector, strong references to Python and Java data are managed in Qore and released when there are no more valid references to the data (in Qore - therefore various tricks are used to manage references transparently including sing thread-local data; there is also the possibility of using custom reference handlers to maintain the validity of objects using different language runtimes and garbage collection implementations). A high level description of the approach is here: https://drive.google.com/file/d/1QfzoXKoqgm6s1wTTykB0VdnIo4j5p0oK/view?usp=sharing
seq
- Bioinformatics programming language
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A Python-based programming language for high-performance computational genomics
> Seq is a Python-compatible language, and the vast majority of Python programs should work without any modifications
https://github.com/seq-lang/seq
- Seq – A programming language for computational genomics and bioinformatics
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Hacker News top posts: Sep 15, 2021
Seq: A programming language for high-performance computational genomics\ (17 comments)
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Seq: A programming language for high-performance computational genomics
They support both, and will deprecate Python 2 style soon.
https://github.com/seq-lang/seq/issues/223
What are some alternatives?
fetlang - Fetish-themed programming language
Nim - Nim is a statically typed compiled systems programming language. It combines successful concepts from mature languages like Python, Ada and Modula. Its design focuses on efficiency, expressiveness, and elegance (in that order of priority).
supercollider - An audio server, programming language, and IDE for sound synthesis and algorithmic composition.
adam - ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
edlib - Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
wyng-backup - Fast Time Machine-like backups for logical volumes & disk images
Biopython - Official git repository for Biopython (originally converted from CVS)
bowtie2 - A fast and sensitive gapped read aligner
seq-genomics - Coursera Bioinformatics / Stepik Genome Sequencing with seq-lang
poly - A Go package for engineering organisms.
bioconda-recipes - Conda recipes for the bioconda channel.
TensorComprehensions - A domain specific language to express machine learning workloads.