seq
TensorComprehensions
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seq | TensorComprehensions | |
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15 | 1 | |
634 | 1,695 | |
- | - | |
0.7 | 0.0 | |
over 1 year ago | about 4 years ago | |
C++ | C++ | |
Apache License 2.0 | Apache License 2.0 |
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seq
- Bioinformatics programming language
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A Python-based programming language for high-performance computational genomics
> Seq is a Python-compatible language, and the vast majority of Python programs should work without any modifications
https://github.com/seq-lang/seq
- Seq – A programming language for computational genomics and bioinformatics
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Hacker News top posts: Sep 15, 2021
Seq: A programming language for high-performance computational genomics\ (17 comments)
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Seq: A programming language for high-performance computational genomics
They support both, and will deprecate Python 2 style soon.
https://github.com/seq-lang/seq/issues/223
TensorComprehensions
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Programming Languages where element-wise matrix notation is possible
Dex from DeepMind have it natively. TensorComprehensions is also cool.
What are some alternatives?
Nim - Nim is a statically typed compiled systems programming language. It combines successful concepts from mature languages like Python, Ada and Modula. Its design focuses on efficiency, expressiveness, and elegance (in that order of priority).
Halide - a language for fast, portable data-parallel computation
adam - ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
TensorOperations.jl - Julia package for tensor contractions and related operations
edlib - Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
TensorFlock - A small functional tensor language with Einstein summation notation convention and shape-checking at compile-time.
wyng-backup - Fast Time Machine-like backups for logical volumes & disk images
stu - Build automation
Biopython - Official git repository for Biopython (originally converted from CVS)
MPS - JetBrains Meta programming System
bowtie2 - A fast and sensitive gapped read aligner
tensorflow - An Open Source Machine Learning Framework for Everyone