pyrodigal VS orfipy

Compare pyrodigal vs orfipy and see what are their differences.

pyrodigal

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD! (by althonos)
orf-finder metagenomes Python bioconda python-library cython-wrapper python-interface prodigal Genome gene-finding Bioinformatics Simd
Source Code
pyrodigal.readthedocs.org
Suggest alternative
Edit details

orfipy

Fast and flexible ORF finder (by urmi-21)
Bioinformatics Protein Dna Python codon-tables extract-orfs orf-detection orf-search orf-finder
Source Code
Suggest alternative
Edit details
InfluxDB - Power Real-Time Data Analytics at Scale
Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
www.influxdata.com
featured
SaaSHub - Software Alternatives and Reviews
SaaSHub helps you find the best software and product alternatives
www.saashub.com
featured
pyrodigal orfipy
1 2
122 46
- -
8.7 1.8
2 days ago over 2 years ago
Cython Python
GNU General Public License v3.0 only MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

pyrodigal

Posts with mentions or reviews of pyrodigal. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-06-19.

orfipy

Posts with mentions or reviews of orfipy. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-08-08.

What are some alternatives?

When comparing pyrodigal and orfipy you can also consider the following projects:

Prodigal - Prodigal Gene Prediction Software

galaxy - Data intensive science for everyone.

cyvcf2 - cython + htslib == fast VCF and BCF processing

Biopython - Official git repository for Biopython (originally converted from CVS)

MultiQC - Aggregate results from bioinformatics analyses across many samples into a single report.

reCOGnizer - A tool for domain based annotation with databases from the Conserved Domains Database

DNA-to-Protein-sequence - Translate a string containing a nucleotide sequence(DNA) into a string containing the corresponding sequence of amino acids.

pybase64 - Fast Base64 encoding/decoding in Python

DNA-to-Amino-Acid-Converter - This program breaks apart a DNA string and dispalys each amino acid associated with each codon

masurca

pyrodigal vs Prodigal orfipy vs galaxy pyrodigal vs cyvcf2 orfipy vs Biopython pyrodigal vs MultiQC orfipy vs reCOGnizer pyrodigal vs DNA-to-Protein-sequence pyrodigal vs pybase64 pyrodigal vs DNA-to-Amino-Acid-Converter pyrodigal vs masurca