pygraft
typedb-bio
pygraft | typedb-bio | |
---|---|---|
1 | 1 | |
641 | 73 | |
- | - | |
8.0 | 4.6 | |
4 months ago | 10 months ago | |
Python | Python | |
MIT License | - |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
pygraft
typedb-bio
-
How Roche Discovered Novel Potential Gene Targets with TypeDB
For this purpose, David built out a set of rules and schema in TypeQL. Below is just a very small excerpt of how such data can be modelled — taken from BioGrakn-Covid, a Vaticle community-led project by Konrad Mysliwiec (Data Science Software Engineer, Roche). Note that this is a selected schema; the full schema can be found within the BioGrakn-Covid schema file.
What are some alternatives?
Tyche - A library for probabilistic reasoning and belief modelling in Python.
grakn - TypeDB: the polymorphic database powered by types
foodon - The core repository for the FOODON food ontology project. This holds the key classes of the ontology; larger files and the results of text-mining projects will be stored in other repos.
obsidian-garden - A knowledge management garden for https://obsidian.md, in which to grow your ideas
Yamale - A schema and validator for YAML.
topic-db - TopicDB is a topic maps-based semantic graph store (using SQLite for persistence)
contextualise - Contextualise is an effective tool particularly suited for organising information-heavy projects and activities consisting of unstructured and widely diverse data and information resources
codex - CoDEx: A set of knowledge graph Completion Datasets Extracted from Wikidata and Wikipedia
ckb - Contextual knowledge bases
discus - A data-centric AI package for ML/AI. Get the best high-quality data for the best results. Discord: https://discord.gg/t6ADqBKrdZ
scispacy - A full spaCy pipeline and models for scientific/biomedical documents.