pyCircos
python Circos (by ponnhide)
plasmidviewer
Python library to visualize circular plasmid maps (by ponnhide)
| pyCircos | plasmidviewer | |
|---|---|---|
| 5 | 1 | |
| 309 | 18 | |
| - | - | |
| 3.0 | 3.2 | |
| about 1 month ago | over 2 years ago | |
| Python | Python | |
| GNU General Public License v3.0 only | GNU General Public License v3.0 only |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
pyCircos
Posts with mentions or reviews of pyCircos.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-07-21.
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Python packages to prepare publication-quality figures.
pyCircos: https://github.com/ponnhide/pyCircos
- Show HN: Beautiful Circos Plots in Matplotlib
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pyCircos: Beautiful circos plots in matplotlib
Thank you for everyone's comments. I'm glad for getting positive responses from this community. This library provides the way not only for drawing circos plots and for visualizing circular phylogenetic trees. https://github.com/ponnhide/pyCircos/blob/master/img/tree-example.png This function is still in progress; however, I hope it helps your biological science.
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Beautiful circos plots in Python
Here, I made pyCircos that allow drawing circos plots with matplotlib. By using this package, not only circos plots but also complex polar plots can be quickly drawn.
plasmidviewer
Posts with mentions or reviews of plasmidviewer.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-04-02.
-
Beautiful circos plots in Python
Thank you for using pyCircos!. As you mentioned, the current label placement function has a lot of room for improvement. Now, I plan to apply the function of the other library, which I'm developing to develop the optimal label placement function that prevents label overlapping. Also, legend rendering is one of the most unusable functions in matplotlib, and I have yet to come up with an implementation of the legend function with high user accessibility.
What are some alternatives?
When comparing pyCircos and plasmidviewer you can also consider the following projects:
pyCirclize - Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
itermplot - An awesome iTerm2 backend for Matplotlib, so you can plot directly in your terminal.
patchworklib - Patchwork for matplotlib: A subplot manager for intuitive layouts in matplotlib, seaborn, and plotnine.
graphlan - High-quality circular representations of taxonomic and phylogenetic trees
phylophlan - Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
ielex-data-and-tree - Data and scripts for producing a Baysian phylogenetic tree sample of for the Indo-European family which is "good enough", using data from IELex (Dunn et al. 2011).