paperai
covasim
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| paperai | covasim | |
|---|---|---|
| 19 | 2 | |
| 1,194 | 242 | |
| 3.1% | 0.8% | |
| 5.9 | 8.4 | |
| 5 months ago | 15 days ago | |
| Python | Python | |
| Apache License 2.0 | MIT License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
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paperai
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Oracle of Zotero: LLM QA of Your Research Library
Nice project!
I've spent quite a lot of time in the medical/scientific literature space. With regards to LLMs, specifically RAG, how the data is chunked is quite important. With that, I have a couple projects that might be beneficial additions.
paperetl (https://github.com/neuml/paperetl) - supports parsing arXiv, PubMed and integrates with GROBID to handle parsing metadata and text from arbitrary papers.
paperai (https://github.com/neuml/paperai) - builds embeddings databases of medical/scientific papers. Supports LLM prompting, semantic workflows and vector search. Built with txtai (https://github.com/neuml/txtai).
While arbitrary chunking/splitting can work, I've found that integrating parsing that has knowledge of medical/scientific paper structure increases the overall accuracy and experience of downstream applications.
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Build Personal ChatGPT Using Your Data
https://github.com/neuml/paperai
Disclaimer: I am the author of both
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[P] Parse research papers into structured data
paperai | paperetl
- Show HN: Semantic search and workflows for medical/scientific papers
- Semantic search and workflows for medical/scientific papers
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# Run txtai in native code
action: translate input: txtai executes machine-learning workflows to transform data and build AI-powered semantic search applications. output: txtai exécute des workflows d'apprentissage automatique pour transformer les données et construire des applications de recherche sémantique alimentées par l'IA. action: translate input: Traditional search systems use keywords to find data output: Les systèmes de recherche traditionnels utilisent des mots-clés pour trouver des données action: summary input: https://github.com/neuml/txtai output: txtai executes machine-learning workflows to transform data and build AI-powered semantic search applications. Semantic search applications have an understanding of natural language and identify results that have the same meaning, not necessarily the same keywords. API bindings for JavaScript, Java, Rust and Go. Cloud-native architecture scales out with container orchestration systems (e. g. Kubernetes) action: summary input: https://github.com/neuml/paperai output: paperai is an AI-powered literature discovery and review engine for medical/scientific papers. Paperai was used to analyze the COVID-19 Open Research Dataset (CORD-19) paperai and NeuML have been recognized in the following articles: Cord-19 Kaggle Challenge Awards Machine-Learning Experts Delve Into 47,000 Papers on Coronavirus Family. real 0m22.478s user 0m13.776s sys 0m3.218s
covasim
- Daily Coronavirus Megathread - 19 September 2021
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Agent-based modelling prospects
It's used a lot in epidemiology. Eg: https://github.com/InstituteforDiseaseModeling/covasim
What are some alternatives?
txtai - 💡 All-in-one open-source embeddings database for semantic search, LLM orchestration and language model workflows
coronavirus-dashboard - Dashboard for tracking Coronavirus (COVID-19) across the UK
tika-python - Tika-Python is a Python binding to the Apache Tikaâ„¢ REST services allowing Tika to be called natively in the Python community.
coronavirus-tracker-api - 🦠A simple and fast (< 200ms) API for tracking the global coronavirus (COVID-19, SARS-CoV-2) outbreak. It's written in python using the 🔥 FastAPI framework. Supports multiple sources!
SciencePlots - Matplotlib styles for scientific plotting
covid-vaccine-booking - This tool can be used to automate booking slots on Co-WIN Platform.
sentence-transformers - Multilingual Sentence & Image Embeddings with BERT
epysurv - Epidemiological surveillance in Python
faiss - A library for efficient similarity search and clustering of dense vectors.
corona - Reverse engineering SARS-CoV-2
scibert - A BERT model for scientific text.
COVID19_AgentBasedSimulation - COVID-ABS: An Agent-Based Model of COVID-19 Epidemic to Simulate Health and Economic Effects of Social Distancing Interventions