Top 9 Python Epidemiology Projects

seirsplus

1 646 0.0 Python

Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.
covasim

2 242 8.2 Python

COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions
InfluxDB

www.influxdata.com sponsored

Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
zEpid

1 134 0.0 Python

Epidemiology analysis package
covid19-sir

3 108 9.3 Python

CovsirPhy: Python library for COVID-19 analysis with phase-dependent SIR-derived ODE models.
TrackingR

2 27 0.0 Python

Python code for "Tracking R of COVID-19 A New Real-Time Estimation Using the Kalman Filter".
episuite

2 26 4.5 Python

A suite of tools for epidemiology in Python.
epispot

4 15 4.4 Python

A tool for modeling infectious diseases.
WorkOS

workos.com sponsored

The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.
epysurv

1 10 0.0 Python

Epidemiological surveillance in Python
SARSCov2Solar

3 0 7.1 Python

Biological Sequences, Machine Learning and SARSCov2

Project mention: [P] Data structures for large sequences | /r/LearningMachines | 2023-09-19

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).