misp-taxonomies VS pyani

Compare misp-taxonomies vs pyani and see what are their differences.

misp-taxonomies

Taxonomies used in MISP taxonomy system and can be used by other information sharing tool. (by MISP)
information-exchange Classification Security taxonomy misp-taxonomies incident-classification government-classification-markings enisa-threat-taxonomy incident-taxonomy incident-response misp-taxonomy machine-tags adversary Malware incident
Source Code
circl.lu
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pyani

Application and Python module for average nucleotide identity analyses of microbes. (by widdowquinn)
Bioinformatics average-nucleotide-identity taxonomy taxonomy-assignment Classification ani
Source Code
widdowquinn.github.io
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misp-taxonomies pyani
1 1
250 180
0.4% -
7.5 9.0
3 days ago 23 days ago
Python Python
GNU General Public License v3.0 or later MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
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misp-taxonomies

Posts with mentions or reviews of misp-taxonomies. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-06-20.
  • Licensing API response data
    2 projects | /r/opensource | 20 Jun 2022
    Some repositories are licensed without having any code: Example with datasets: https://github.com/MISP/misp-taxonomies Example with md documentation: https://github.com/tldr-pages/tldr/blob/main/LICENSE.md

pyani

Posts with mentions or reviews of pyani. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-10-20.
  • MAFFT Alignment taking longer than expected
    2 projects | /r/bioinformatics | 20 Oct 2022
    But to help you along, one would chop up the genomes into smaller bits to robustly handle potential re-arrangements. A classic tool to do so, is the MUMMER algorithm, which for your purpose is nicely implemented here: https://github.com/widdowquinn/pyani

What are some alternatives?

When comparing misp-taxonomies and pyani you can also consider the following projects:

phantasm - PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes

GTDBTk - GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

MOSP - A collaborative platform for creating, editing and sharing JSON objects.

misp-taxonomies vs phantasm pyani vs GTDBTk misp-taxonomies vs MOSP pyani vs phantasm