minimap2
plots2
minimap2 | plots2 | |
---|---|---|
5 | 6 | |
1,688 | 951 | |
- | -0.1% | |
7.6 | 0.0 | |
10 days ago | 13 days ago | |
C | Ruby | |
GNU General Public License v3.0 or later | GNU General Public License v3.0 only |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
minimap2
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Ask HN: Comment here about whatever you're passionate about at the moment
Interested as well! But the future is not so dark, things like e.g. https://github.com/lh3/minimap2 are a breath of fresh air.
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BLAST 10,000 genes?
No experience with this maybe try minimap2(https://github.com/lh3/minimap2) if this doesn't work fall back on blast/blat
- Truncating genome fastas to just overlapping regions
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Alignment of long reads to plasmid and generation of consensus sequence.
You can try minimap2 to align your long reads to your expected plasmid
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Questions about WGS mapping
It sounds like the mapping wasn't very good, you might want to try minimap2 as it is a newer algorithm.
plots2
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Ask HN: Comment here about whatever you're passionate about at the moment
Citizen science! It's great when people realize they can answer their own questions with observation and data, and for activism because data is a powerful story. One friend of mine started https://publiclab.org to feed this, and another is doing data journalism to highlight holes in the government's environmental data. https://www.muckrock.com/project/
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A step-by-step for doing your first open source contribution (and finding where to do it)
My first contribution ever was to PublicLab's plots2 back in 2018. I had no idea what I was doing or what plots2 was. What attracted me was how welcoming they were (and still are) to first time contributors. With them: I opened my first PR, discussed in PR's conversation, and pushed the changes requested. Back then, that was a lot!
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Search function on a website I'm getting built
Hmm so to your first question: That pattern of selecting from a pre-populated list is often used with a tag or chip system where you can select and deselect one or more items from the list, something like this: https://github.com/publiclab/plots2/issues/6026 in this case the search CTA acts as the final decision to search while the selections are populating the search criteria. It sounds your system design is a bit different though. Sounds to me like an issue of heuristics of UI https://www.nngroup.com/articles/ten-usability-heuristics/ the third heuristic states:
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Are there places for amateur researcher to post their work?
Maybe public lab would be a good home? https://publiclab.org/
- what ruby or rails open source projects a beginner-to-intermediate developer can easily contribute to?
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Hacktoberfest: 69 Beginner-Friendly Projects You Can Contribute To
https://github.com/publiclab/plots2 A collaborative knowledge-exchange platform in Rails; we welcome first-time contributors! balloon
What are some alternatives?
bwa-mem2 - The next version of bwa-mem
ArchivesSpace - The ArchivesSpace archives management tool
seqtk - Toolkit for processing sequences in FASTA/Q formats
matplotlib - matplotlib: plotting with Python
seqstats - Quick summary statistics on fasta/fastq(.gz) files
WebsiteOne - A website for Agile Ventures
slivar - genetic variant expressions, annotation, and filtering for great good.
textbook-curriculum - Ada Developers Academy Online Curriculum
MethylDackel - A (mostly) universal methylation extractor for BS-seq experiments.
export-pull-requests - Export pull requests and/or issues to a CSV file. Supports GitHub, GitLab, and Bitbucket
bwa-mem2 - The next version of bwa-mem
Rubocop - A Ruby static code analyzer and formatter, based on the community Ruby style guide. [Moved to: https://github.com/rubocop/rubocop]