minimap2 VS slivar

Compare minimap2 vs slivar and see what are their differences.


A versatile pairwise aligner for genomic and spliced nucleotide sequences (by lh3)


genetic variant expressions, annotation, and filtering for great good. (by brentp)
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minimap2 slivar
5 1
1,672 240
- -
7.8 5.7
9 days ago 4 months ago
C Nim
GNU General Public License v3.0 or later MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.


Posts with mentions or reviews of minimap2. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-11-06.


Posts with mentions or reviews of slivar. We have used some of these posts to build our list of alternatives and similar projects.

We haven't tracked posts mentioning slivar yet.
Tracking mentions began in Dec 2020.

What are some alternatives?

When comparing minimap2 and slivar you can also consider the following projects:

bwa-mem2 - The next version of bwa-mem

seqtk - Toolkit for processing sequences in FASTA/Q formats

seqstats - Quick summary statistics on fasta/fastq(.gz) files

MethylDackel - A (mostly) universal methylation extractor for BS-seq experiments.

bwa-mem2 - The next version of bwa-mem

deepvariant - DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Klib - A standalone and lightweight C library

rare-disease-wf - (WIP) best-practices workflow for rare disease

bwa - Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

Bitgrid - Bitgrid - a new model of computation

open-cravat - A modular annotation tool for genomic variants

biowasm - WebAssembly modules for genomics