minimap2 VS slivar

Compare minimap2 vs slivar and see what are their differences.

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences (by lh3)
Bioinformatics sequence-alignment spliced-alignment Genomics
Source Code
lh3.github.io
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slivar

genetic variant expressions, annotation, and filtering for great good. (by brentp)
Genomics variant-analysis variant-interpretation rare-disease rare-variant-analysis
Source Code
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minimap2 slivar
5 1
1,688 240
- -
7.6 5.7
7 days ago 5 months ago
C Nim
GNU General Public License v3.0 or later MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

minimap2

Posts with mentions or reviews of minimap2. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-11-06.

slivar

Posts with mentions or reviews of slivar. We have used some of these posts to build our list of alternatives and similar projects.
  • Help on installation of GEMINi
    1 project | /r/bioinformatics | 4 Jun 2023
    Looks like they’ve broken the install at some point. If you check the GitHub for Gemini it recommends you replace it with slivar https://github.com/brentp/slivar

What are some alternatives?

When comparing minimap2 and slivar you can also consider the following projects:

bwa-mem2 - The next version of bwa-mem

deepvariant - DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

seqtk - Toolkit for processing sequences in FASTA/Q formats

bwa - Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

seqstats - Quick summary statistics on fasta/fastq(.gz) files

rare-disease-wf - (WIP) best-practices workflow for rare disease

MethylDackel - A (mostly) universal methylation extractor for BS-seq experiments.

open-cravat - A modular annotation tool for genomic variants

bwa-mem2 - The next version of bwa-mem

Biopython - Official git repository for Biopython (originally converted from CVS)

Klib - A standalone and lightweight C library

codeql - GitHub Satellite 2020 workshops on finding security vulnerabilities with CodeQL for Java/JavaScript.

minimap2 vs bwa-mem2 slivar vs deepvariant minimap2 vs seqtk slivar vs bwa minimap2 vs seqstats slivar vs rare-disease-wf minimap2 vs MethylDackel slivar vs open-cravat minimap2 vs bwa-mem2 slivar vs Biopython minimap2 vs Klib slivar vs codeql