kneaddata vs phylophlan

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kneaddata		phylophlan
	Project
1	Mentions	1
99	Stars	112
-	Growth	2.7%
3.1	Activity	6.9
about 1 month ago	Latest Commit	17 days ago
Python	Language	Python
GNU General Public License v3.0 or later	License	MIT License

The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

kneaddata

Posts with mentions or reviews of kneaddata. We have used some of these posts to build our list of alternatives and similar projects.

How to match up names of read pairs in constant memory?
1 project | /r/bioinformatics | 18 Feb 2021

I have, uh, a few of those files. But I've done https://github.com/biobakery/kneaddata/pull/16 and I think I'm good now!

phylophlan

Posts with mentions or reviews of phylophlan. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-02-16.

PhyloPhlAN Tutorial?
2 projects | /r/bioinformatics | 16 Feb 2023

I am trying to use PhyloPhlAn (https://github.com/biobakery/phylophlan). I have read the wiki in GitHub it is very confusing. I tried several runs but it came out as an error.

What are some alternatives?

When comparing kneaddata and phylophlan you can also consider the following projects:

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