jvarkit VS galaxy

Compare jvarkit vs galaxy and see what are their differences.

jvarkit

Java utilities for Bioinformatics (by lindenb)
Bioinformatics Java next-generation-sequencing ngs Science Biology Genomics
Source Code
jvarkit.readthedocs.io
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galaxy

Data intensive science for everyone. (by galaxyproject)
Bioinformatics Workflow Genomics Science sequencing ngs Dna usegalaxy Pipeline Workflow engine HacktoberFest
Source Code
galaxyproject.org
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jvarkit galaxy
1 4
468 1,319
- 1.7%
8.9 10.0
1 day ago 7 days ago
Java Python
GNU General Public License v3.0 or later GNU General Public License v3.0 or later
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

jvarkit

Posts with mentions or reviews of jvarkit. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-03-28.

galaxy

Posts with mentions or reviews of galaxy. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-06-17.

What are some alternatives?

When comparing jvarkit and galaxy you can also consider the following projects:

Tablesaw - Java dataframe and visualization library

nextflow - A DSL for data-driven computational pipelines

MSPaintIDE - Programming in MS Paint

Biopython - Official git repository for Biopython (originally converted from CVS)

DNAnalyzer - Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools

deepvariant - DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

fastp - An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

sarek - Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

galaxy_ng - Ansible Galaxy Server - Issues on https://forum.ansible.com Docs on https://galaxy-ng.readthedocs.io/

ncbi-genome-download - Scripts to download genomes from the NCBI FTP servers

orfipy - Fast and flexible ORF finder

ansible-proxmox - Ansible for provisioning proxmox servers

jvarkit vs Tablesaw galaxy vs nextflow jvarkit vs MSPaintIDE galaxy vs Biopython jvarkit vs DNAnalyzer galaxy vs deepvariant galaxy vs fastp galaxy vs sarek galaxy vs galaxy_ng galaxy vs ncbi-genome-download galaxy vs orfipy galaxy vs ansible-proxmox