Top 3 Java Bioinformatic Projects

BioJava

2 575 8.2 Java

:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.

Project mention: Outperforming Rust DNA sequence parsing benchmarks by 50% with Mojo | news.ycombinator.com | 2024-02-08

Here is a cache of valid and invalid FASTQ files for unit tests
https://github.com/biojava/biojava/tree/master/biojava-genom...

jvarkit

1 467 8.5 Java

Java utilities for Bioinformatics
WorkOS

workos.com sponsored

The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.
DNAnalyzer

4 123 8.1 Java

Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools

Project mention: I'm approaching 1000 followers! | dev.to | 2023-06-13

P.S. If you haven't checked out my latest project, DNAnalyzer, please do so! It's a groundbreaking open source tool that brings the power of machine learning to DNA analysis. You can find it on GitHub or read more about it here on dev.to. I would love to hear your feedback and suggestions on how to make it better and more useful for everyone.

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).