Top 4 Java Genomic Projects

BioJava

2 575 8.2 Java

:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.

Project mention: Outperforming Rust DNA sequence parsing benchmarks by 50% with Mojo | news.ycombinator.com | 2024-02-08

Here is a cache of valid and invalid FASTQ files for unit tests
https://github.com/biojava/biojava/tree/master/biojava-genom...

jvarkit

1 467 8.5 Java

Java utilities for Bioinformatics
InfluxDB

www.influxdata.com sponsored

Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
Exomiser

3 180 9.0 Java

A Tool to Annotate and Prioritize Exome Variants
DNAnalyzer

4 123 8.1 Java

Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools

Project mention: I'm approaching 1000 followers! | dev.to | 2023-06-13

P.S. If you haven't checked out my latest project, DNAnalyzer, please do so! It's a groundbreaking open source tool that brings the power of machine learning to DNA analysis. You can find it on GitHub or read more about it here on dev.to. I would love to hear your feedback and suggestions on how to make it better and more useful for everyone.

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).