foldseek VS bwa

Compare foldseek vs bwa and see what are their differences.

foldseek

Foldseek enables fast and sensitive comparisons of large structure sets. (by steineggerlab)
protein-structure alignments Bioinformatics Clustering
Source Code
foldseek.com
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bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment) (by lh3)
Bioinformatics sequence-alignment Genomics fm-index
Source Code
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foldseek bwa
1 3
649 1,454
7.7% -
9.3 2.7
7 days ago about 1 month ago
C C
GNU General Public License v3.0 only GNU General Public License v3.0 only
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

foldseek

Posts with mentions or reviews of foldseek. We have used some of these posts to build our list of alternatives and similar projects.
  • AI predicts shape of nearly every known protein
    1 project | news.ycombinator.com | 28 Jul 2022
    "Some sophisticated applications of the expanded AlphaFold database might also depend on downloading its entire 23 terabyte contents, which won’t be feasible for many teams, Steinegger says. Cloud-based storage could also prove costly. Steinegger has co-developed a software tool called FoldSeek that can quickly find structurally similar proteins and which should be able to squash the AlphaFold data down considerably."

    [FoldSeek Search](https://search.foldseek.com/search)

    [Github:FoldSeek](https://github.com/steineggerlab/foldseek)

bwa

Posts with mentions or reviews of bwa. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-05-25.

What are some alternatives?

When comparing foldseek and bwa you can also consider the following projects:

DAGSfM - Distributed and Graph-based Structure from Motion. This project includes the official implementation of our Pattern Recognition 2020 paper: Graph-Based Parallel Large Scale Structure from Motion.

slivar - genetic variant expressions, annotation, and filtering for great good.

hh-suite - Remote protein homology detection suite.

MethylDackel - A (mostly) universal methylation extractor for BS-seq experiments.

MooseFS - MooseFS – Open Source, Petabyte, Fault-Tolerant, Highly Performing, Scalable Network Distributed File System (Software-Defined Storage)

sra-tools - SRA Tools

mars - Asynchronous Block-Level Storage Replication

bowtie - An ultrafast memory-efficient short read aligner

seqtk - Toolkit for processing sequences in FASTA/Q formats

spades - SPAdes Genome Assembler

libBigWig - A C library for handling bigWig files

javascript-obfuscator - A powerful obfuscator for JavaScript and Node.js

foldseek vs DAGSfM bwa vs slivar foldseek vs hh-suite bwa vs MethylDackel foldseek vs MooseFS bwa vs sra-tools foldseek vs mars bwa vs bowtie foldseek vs seqtk bwa vs spades bwa vs libBigWig bwa vs javascript-obfuscator