bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment) (by lh3)
libBigWig
A C library for handling bigWig files (by dpryan79)
| bwa | libBigWig | |
|---|---|---|
| 3 | 1 | |
| 1,453 | 70 | |
| - | - | |
| 2.7 | 0.0 | |
| 18 days ago | over 1 year ago | |
| C | C | |
| GNU General Public License v3.0 only | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
bwa
Posts with mentions or reviews of bwa.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-05-25.
-
my friend showed me his code, thees are all functions
Check out these sweet macros (from the same repo): https://github.com/lh3/bwa/blob/139f68fc4c3747813783a488aef2adc86626b01b/kbtree.h
- Scientists Are Finding Fungi in Cancerous Tumors
- Burrows–Wheeler Transform
libBigWig
Posts with mentions or reviews of libBigWig.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-09-16.
-
Technical specification for the bigWig file format
And that is using libBigWig which specifically references Kent Utils.
What are some alternatives?
When comparing bwa and libBigWig you can also consider the following projects:
foldseek - Foldseek enables fast and sensitive comparisons of large structure sets.
samtools - Tools (written in C using htslib) for manipulating next-generation sequencing data
slivar - genetic variant expressions, annotation, and filtering for great good.
bbi-js - Parser for bigwig and bigbed files
MethylDackel - A (mostly) universal methylation extractor for BS-seq experiments.
sra-tools - SRA Tools
bowtie - An ultrafast memory-efficient short read aligner
spades - SPAdes Genome Assembler
javascript-obfuscator - A powerful obfuscator for JavaScript and Node.js
biostar-central - Biostar Q&A