foldseek

Foldseek enables fast and sensitive comparisons of large structure sets. (by steineggerlab)

Foldseek Alternatives

Similar projects and alternatives to foldseek based on common topics and language

  • bwa

    Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

  • DAGSfM

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  • WorkOS

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  • hh-suite

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  • mars

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  • seqtk

    Toolkit for processing sequences in FASTA/Q formats

NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a better foldseek alternative or higher similarity.

foldseek reviews and mentions

Posts with mentions or reviews of foldseek. We have used some of these posts to build our list of alternatives and similar projects.
  • AI predicts shape of nearly every known protein
    1 project | news.ycombinator.com | 28 Jul 2022
    "Some sophisticated applications of the expanded AlphaFold database might also depend on downloading its entire 23 terabyte contents, which won’t be feasible for many teams, Steinegger says. Cloud-based storage could also prove costly. Steinegger has co-developed a software tool called FoldSeek that can quickly find structurally similar proteins and which should be able to squash the AlphaFold data down considerably."

    [FoldSeek Search](https://search.foldseek.com/search)

    [Github:FoldSeek](https://github.com/steineggerlab/foldseek)

Stats

Basic foldseek repo stats
1
637
9.3
5 days ago

steineggerlab/foldseek is an open source project licensed under GNU General Public License v3.0 only which is an OSI approved license.

The primary programming language of foldseek is C.


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