ermineR
R wrapper for ermineJ (by PavlidisLab)
jvarkit
Java utilities for Bioinformatics (by lindenb)
| ermineR | jvarkit | |
|---|---|---|
| 1 | 1 | |
| 6 | 467 | |
| - | - | |
| 0.0 | 8.9 | |
| over 1 year ago | 9 days ago | |
| R | Java | |
| GNU General Public License v3.0 or later | GNU General Public License v3.0 or later |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
ermineR
Posts with mentions or reviews of ermineR.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Gene ontology of differentially expressed genes in R
I would recommend ermineJ as thier statistical approach is better suited to overcome issues with how GO is constructed and the imbalance in the sizes of GO terms (sizes meaning the number of genes assigned). They have a graphical, command line interface and an R package link
jvarkit
Posts with mentions or reviews of jvarkit.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-03-28.
-
APIs like this should be burnt in hell
In case you want to see a working example of what the "stylesheet" used to render the JSONx back to JSON looks like, here you go.
What are some alternatives?
When comparing ermineR and jvarkit you can also consider the following projects:
full_spectrum_bioinformatics - An open-access bioinformatics text
Tablesaw - Java dataframe and visualization library
rhmmer - Simple R utilities for working with HMMER
MSPaintIDE - Programming in MS Paint
Baltica - Baltica: integrated differential junction usage
DNAnalyzer - Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools
orthologr - Genome wide orthology inference and dNdS estimation