dash-cytoscape VS Clairvoyante

Compare dash-cytoscape vs Clairvoyante and see what are their differences.

Clairvoyante

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing (by aquaskyline)
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dash-cytoscape Clairvoyante
1 1
571 172
1.2% -
9.3 0.0
about 1 month ago 4 months ago
Python Python
MIT License BSD 3-clause "New" or "Revised" License
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dash-cytoscape

Posts with mentions or reviews of dash-cytoscape. We have used some of these posts to build our list of alternatives and similar projects.

Clairvoyante

Posts with mentions or reviews of Clairvoyante. We have used some of these posts to build our list of alternatives and similar projects.
  • Installing packages for python2 with pip when they're already installed for python3
    1 project | /r/learnpython | 29 Jun 2021
    Hi! This might be a dumb question, but I am stuck at this problem. I am using Ubuntu 20.04 with Anaconda and I have both Python 2.7 and 3.7 on my system. I am trying to use this tool: https://github.com/aquaskyline/Clairvoyante but I am running into problems that there are packages, such as numpy and intervaltree that are installed for python3 but not for python2. When I run a python2 script that requires this package, I am getting errors like

What are some alternatives?

When comparing dash-cytoscape and Clairvoyante you can also consider the following projects:

django-plotly-dash - Expose plotly dash apps as django tags

dance - DANCE: a deep learning library and benchmark platform for single-cell analysis

cytoscape.js-dagre - The Dagre layout for DAGs and trees for Cytoscape.js

pepper - PEPPER-Margin-DeepVariant

dash-sample-apps - Open-source demos hosted on Dash Gallery

OpenChem - OpenChem: Deep Learning toolkit for Computational Chemistry and Drug Design Research

PteraSoftware - Ptera Software is a fast, easy-to-use, and open-source software package for analyzing flapping-wing flight.

CNApy - An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

dlPlotTool - Plot your DL model accuracies, learinng progress & outputs with no more than 3 lines of code.

biotite - A comprehensive library for computational molecular biology

scanpy - Single-cell analysis in Python. Scales to >1M cells.

metaGEM - :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data