pangolin
nextclade
| pangolin | nextclade | |
|---|---|---|
| 3 | 2 | |
| 413 | 199 | |
| 0.5% | 2.5% | |
| 5.7 | 9.8 | |
| 7 days ago | 8 days ago | |
| Python | TypeScript | |
| GNU General Public License v3.0 only | MIT License |
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pangolin
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How are Coronavirus classification numbers created, and is there a universal system for all viruses?
The letters and numbers are giving sequential information in the tree, and you can think of numbers further to the right meaning a split further down the tree. Although in an attempt to curtail complexity and ident length , it is not quite as simple as the tree being only 5 layers deep for eg. Delta B.1.617.2. Exact details are on the pangolin github.
- Classification of Omicron (B.1.1.529): SARS-CoV-2 Variant of Concern
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For SARS-CoV-2 genomic analysis, what is the difference in utility of a Pangolin Lineage versus a NextClade Clade (e.g. lineage B.1.617.2 vs clade 21A)?
Lineage and clade assignments--especially by Pangolin and Nextclade, respectively--seem to be the most popular way to characterize SARS-CoV-2 genomes and so I'm wondering how these two concepts are applied differently to inform our understanding of the pandemic.
nextclade
- Why does musl make my Rust code so slow? (2020)
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For SARS-CoV-2 genomic analysis, what is the difference in utility of a Pangolin Lineage versus a NextClade Clade (e.g. lineage B.1.617.2 vs clade 21A)?
Lineage and clade assignments--especially by Pangolin and Nextclade, respectively--seem to be the most popular way to characterize SARS-CoV-2 genomes and so I'm wondering how these two concepts are applied differently to inform our understanding of the pandemic.
What are some alternatives?
pango-designation - Repository for suggesting new lineages that should be added to the current scheme
fastp - An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
covid-19-api - A JavaScript library that provides a simple API for the Johns Hopkins University CSSE COVID-19 time series data.
BioExplorer - The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration
covid19_scenarios - Models of COVID-19 outbreak trajectories and hospital demand
iTeribus - Un'applicazione per la creazione e la compilazione automatica dei moduli di autodichiarazione COVID 19.
k8s-folding-at-home - ⛑ Run folding@home on your Kubernetes cluster
ncov - Nextstrain build for novel coronavirus SARS-CoV-2
covid-certificate-scanner - Web application that scans EU Digital Covid Certificates to extract and display all the information they enclose.
covid19-action-plan-nc - Projet de gestion de mes tâches liées aux actions autour de la crise saniatire du COVD-19 en Nouvelle-Calédonie
jsPsych - Create behavioral experiments in a browser using JavaScript
relibc - Mirror of https://gitlab.redox-os.org/redox-os/relibc