nextclade
BioExplorer
nextclade | BioExplorer | |
---|---|---|
2 | 6 | |
199 | 62 | |
2.5% | - | |
9.8 | 9.2 | |
9 days ago | about 1 month ago | |
TypeScript | C++ | |
MIT License | GNU General Public License v3.0 only |
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nextclade
- Why does musl make my Rust code so slow? (2020)
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For SARS-CoV-2 genomic analysis, what is the difference in utility of a Pangolin Lineage versus a NextClade Clade (e.g. lineage B.1.617.2 vs clade 21A)?
Lineage and clade assignments--especially by Pangolin and Nextclade, respectively--seem to be the most popular way to characterize SARS-CoV-2 genomes and so I'm wondering how these two concepts are applied differently to inform our understanding of the pandemic.
BioExplorer
What are some alternatives?
pangolin - Software package for assigning SARS-CoV-2 genome sequences to global lineages.
covid-19-api - A JavaScript library that provides a simple API for the Johns Hopkins University CSSE COVID-19 time series data.
fastp - An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
covid19_scenarios - Models of COVID-19 outbreak trajectories and hospital demand
Covid19 - COVID 19 - React Native app for displaying your country's stats on Corona Virus available on Android, iOS and Web
relion - Image-processing software for cryo-electron microscopy
iTeribus - Un'applicazione per la creazione e la compilazione automatica dei moduli di autodichiarazione COVID 19.
tinyrenderer - A brief computer graphics / rendering course
k8s-folding-at-home - ⛑ Run folding@home on your Kubernetes cluster
CoreNeuron - Simulator optimized for large scale neural network simulations.