nextclade
covid-19-api
nextclade | covid-19-api | |
---|---|---|
2 | 1 | |
199 | 5 | |
2.5% | - | |
9.8 | 0.0 | |
9 days ago | over 1 year ago | |
TypeScript | TypeScript | |
MIT License | ISC License |
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nextclade
- Why does musl make my Rust code so slow? (2020)
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For SARS-CoV-2 genomic analysis, what is the difference in utility of a Pangolin Lineage versus a NextClade Clade (e.g. lineage B.1.617.2 vs clade 21A)?
Lineage and clade assignments--especially by Pangolin and Nextclade, respectively--seem to be the most popular way to characterize SARS-CoV-2 genomes and so I'm wondering how these two concepts are applied differently to inform our understanding of the pandemic.
covid-19-api
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Who's Available? [January 2021]
COVID-19 API: A JavaScript library that provides a simple API to access the Johns Hopkins University's COVID-19 data. It is well-tested and has detailed documentation: Repository: https://github.com/evrimfeyyaz/covid-19-api.
What are some alternatives?
pangolin - Software package for assigning SARS-CoV-2 genome sequences to global lineages.
BioExplorer - The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration
fastp - An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
web-app - Web application of the Jalgaon CoHelp
COVID-19 in Charts - Visual representations of the progression of COVID-19.
covid19_scenarios - Models of COVID-19 outbreak trajectories and hospital demand
peopledatalabs-js - A universal JS client with TypeScript support for the People Data Labs API
iTeribus - Un'applicazione per la creazione e la compilazione automatica dei moduli di autodichiarazione COVID 19.
indie-sumo
k8s-folding-at-home - ⛑ Run folding@home on your Kubernetes cluster
ncov - Nextstrain build for novel coronavirus SARS-CoV-2