nextclade
ncov
| nextclade | ncov | |
|---|---|---|
| 2 | 13 | |
| 199 | 1,352 | |
| 2.5% | 0.2% | |
| 9.8 | 8.4 | |
| 9 days ago | 5 days ago | |
| TypeScript | Python | |
| MIT License | MIT License |
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For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
nextclade
- Why does musl make my Rust code so slow? (2020)
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For SARS-CoV-2 genomic analysis, what is the difference in utility of a Pangolin Lineage versus a NextClade Clade (e.g. lineage B.1.617.2 vs clade 21A)?
Lineage and clade assignments--especially by Pangolin and Nextclade, respectively--seem to be the most popular way to characterize SARS-CoV-2 genomes and so I'm wondering how these two concepts are applied differently to inform our understanding of the pandemic.
ncov
- 其实新冠早就疯狂变异了,只是为了不影响公共舆论,不给新病毒取名而已.
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Coronavirus Datsets
Mutations (thanks /u/Mynewestaccount34578)
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Does the original strain of Covid still exist in the wild or has it been completely replaced by more recent variants?
Nextstrain.org has been using genomic epidemiology to track SARS-CoV2 and it’s evolution since the beginning of the pandemic. Looks like the original strain and even some more recent variants have become virtually undetectable. https://nextstrain.org/ncov/
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Not Vaxxed and got Omnicron
https://nextstrain.org/ncov all of that data comes from identifying samples and doing full sequences.
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Megathread #67: SARS-CoV-2/COVID-19 Discussion. 1/12/2022
Nextstrain
- COVID Omicron variant constructed sequence according to Nextstrain's specifications.
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Covid19 RNA sequence (Wuhan/Hu-1/2019) composed with the most universal and explicit symbol of death
In this Covid19 RNA sequence (Wuhan/Hu-1/2019), there are exactly 499 nucleotides. (Data source1 : https://www.ncbi.nlm.nih.gov/nuccore/1798174254 | Data source2 : https://github.com/nextstrain/ncov/blob/master/data/references_sequences.fasta)
- Pfizer expands recall of anti-smoking drug over carcinogen presence
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There is no law higher than the Natural law. Nature’s law :1 If you cannot protect it, then you don’t deserve it. This law is on full display with the evolutionary arms race that has taken place over billions of years. If you cannot protect yourself from predators, then you don’t deserve to survive.
You could try getting in touch with these guys
What are some alternatives?
pangolin - Software package for assigning SARS-CoV-2 genome sequences to global lineages.
covid-19-data - A repository of data on coronavirus cases and deaths in the U.S.
fastp - An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
covariants - Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
covid-19-api - A JavaScript library that provides a simple API for the Johns Hopkins University CSSE COVID-19 time series data.
COVID19_mobility - COVID-19 Mobility Data Aggregator. Scraper of Google, Apple, Waze and TomTom COVID-19 Mobility Reports🚶🚘🚉
BioExplorer - The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration
covid-19-data - Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data
covid19_scenarios - Models of COVID-19 outbreak trajectories and hospital demand
2019-nCoV - Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE [Moved to: https://github.com/CSSEGISandData/COVID-19]
iTeribus - Un'applicazione per la creazione e la compilazione automatica dei moduli di autodichiarazione COVID 19.
coronavirus-tracker-api - 🦠 A simple and fast (< 200ms) API for tracking the global coronavirus (COVID-19, SARS-CoV-2) outbreak. It's written in python using the 🔥 FastAPI framework. Supports multiple sources!