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Pangolin Alternatives
Similar projects and alternatives to pangolin
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nextclade
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
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WorkOS
The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.
NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a better pangolin alternative or higher similarity.
pangolin reviews and mentions
Posts with mentions or reviews of pangolin.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-11-26.
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How are Coronavirus classification numbers created, and is there a universal system for all viruses?
The letters and numbers are giving sequential information in the tree, and you can think of numbers further to the right meaning a split further down the tree. Although in an attempt to curtail complexity and ident length , it is not quite as simple as the tree being only 5 layers deep for eg. Delta B.1.617.2. Exact details are on the pangolin github.
- Classification of Omicron (B.1.1.529): SARS-CoV-2 Variant of Concern
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For SARS-CoV-2 genomic analysis, what is the difference in utility of a Pangolin Lineage versus a NextClade Clade (e.g. lineage B.1.617.2 vs clade 21A)?
Lineage and clade assignments--especially by Pangolin and Nextclade, respectively--seem to be the most popular way to characterize SARS-CoV-2 genomes and so I'm wondering how these two concepts are applied differently to inform our understanding of the pandemic.
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A note from our sponsor - SaaSHub
www.saashub.com | 26 Apr 2024
Stats
Basic pangolin repo stats
3
413
5.9
about 1 month ago
cov-lineages/pangolin is an open source project licensed under GNU General Public License v3.0 only which is an OSI approved license.
The primary programming language of pangolin is Python.
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