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Pango-designation Alternatives
Similar projects and alternatives to pango-designation
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pangolin
Software package for assigning SARS-CoV-2 genome sequences to global lineages. (by cov-lineages)
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InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
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covid-19-excess-deaths-tracker
Source code and data for The Economist's covid-19 excess deaths tracker
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privacy-redirect
A simple web extension that redirects Twitter, YouTube, Instagram & Google Maps requests to privacy friendly alternatives.
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WorkOS
The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.
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SARS-CoV-2_variant-reports
Informal summaries of notable SARS-CoV-2 lineages
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covariants
Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
pango-designation reviews and mentions
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Alarming antibody evasion properties of rising SARS-CoV-2 BQ and XBB subvariants
The absolute latest information on strains/evolution is being monitored on github here (don't post and very technical, but): https://github.com/cov-lineages/pango-designation/issues
To add on to /u/BillyGrier's point, the pango-designation github is an excellent source. But I would urge you to refrain from commenting or voting there - the world's foremost covid geneticists and sequencing technicians are communicating there daily to find and number all these new variants. Here is the designation thread of XBF.
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October 14 2022 4 PM CDPHE Update
As of this week there's a clear apex variant for the first time in a while: XBB.1. First sampled about 6 weeks ago, noticed by humans less than a month ago, and named 12 days ago, we now know with reasonable confidence that it's the major cause of the rapid Singapore case rise.
- Coronascenario's doordacht: Handreiking voor noodzakelijke keuzes | IN DUTCH (use Google translate) "Corona Scenarios: Thoughtful Guide To Necessary Choices" details in SS
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Schedule for Week of July 31, 2022
COVID wreaks absolute havoc on T-cells and the innate immune system in general. Mitochondria, kidneys, clotting, the list is endless. This virus is astounding. It literally encodes a debilitating protein for mitochondrial dysfunction using the same genetic code as the N gene. It managed to mutate one nucleotide so that N would not change but ORF9b got much worse in BA.5.
I'm going to mostly start by doing updates on existing issues but I can't wait to find my own meaningless variant that gets designated with 28 total sequences before going extinct by 51.
- July 8 2022 4PM CDPHE Update
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New Omicron subvariants BE.1 and BF.1 found in Louisiana
Aliases is a better term than renaming. As you say there are no real strict rules, but as the other reply says they alias anything that's long enough. Here you can find all the aliases.
Here's the one for BF.1 https://github.com/cov-lineages/pango-designation/issues/618
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A note from our sponsor - InfluxDB
www.influxdata.com | 28 Mar 2024
Stats
cov-lineages/pango-designation is an open source project licensed under GNU General Public License v3.0 or later which is an OSI approved license.
The primary programming language of pango-designation is Jupyter Notebook.
Popular Comparisons
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