bwa VS slivar

Compare bwa vs slivar and see what are their differences.

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment) (by lh3)
Bioinformatics sequence-alignment Genomics fm-index
Source Code
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slivar

genetic variant expressions, annotation, and filtering for great good. (by brentp)
Genomics variant-analysis variant-interpretation rare-disease rare-variant-analysis
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bwa slivar
3 1
1,453 240
- -
2.7 5.7
17 days ago 5 months ago
C Nim
GNU General Public License v3.0 only MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

bwa

Posts with mentions or reviews of bwa. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-05-25.

slivar

Posts with mentions or reviews of slivar. We have used some of these posts to build our list of alternatives and similar projects.
  • Help on installation of GEMINi
    1 project | /r/bioinformatics | 4 Jun 2023
    Looks like they’ve broken the install at some point. If you check the GitHub for Gemini it recommends you replace it with slivar https://github.com/brentp/slivar

What are some alternatives?

When comparing bwa and slivar you can also consider the following projects:

foldseek - Foldseek enables fast and sensitive comparisons of large structure sets.

minimap2 - A versatile pairwise aligner for genomic and spliced nucleotide sequences

MethylDackel - A (mostly) universal methylation extractor for BS-seq experiments.

deepvariant - DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

sra-tools - SRA Tools

rare-disease-wf - (WIP) best-practices workflow for rare disease

bowtie - An ultrafast memory-efficient short read aligner

open-cravat - A modular annotation tool for genomic variants

spades - SPAdes Genome Assembler

Biopython - Official git repository for Biopython (originally converted from CVS)

libBigWig - A C library for handling bigWig files

codeql - GitHub Satellite 2020 workshops on finding security vulnerabilities with CodeQL for Java/JavaScript.

bwa vs foldseek slivar vs minimap2 bwa vs MethylDackel slivar vs deepvariant bwa vs sra-tools slivar vs rare-disease-wf bwa vs bowtie slivar vs open-cravat bwa vs spades slivar vs Biopython bwa vs libBigWig slivar vs codeql