bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment) (by lh3)
biostar-central
Biostar Q&A (by ialbert)
| bwa | biostar-central | |
|---|---|---|
| 3 | 10 | |
| 1,453 | 573 | |
| - | - | |
| 2.7 | 2.5 | |
| 17 days ago | 17 days ago | |
| C | Python | |
| GNU General Public License v3.0 only | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
bwa
Posts with mentions or reviews of bwa.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-05-25.
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my friend showed me his code, thees are all functions
Check out these sweet macros (from the same repo): https://github.com/lh3/bwa/blob/139f68fc4c3747813783a488aef2adc86626b01b/kbtree.h
- Scientists Are Finding Fungi in Cancerous Tumors
- Burrows–Wheeler Transform
biostar-central
Posts with mentions or reviews of biostar-central.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-11-05.
-
Forums/Communites for Bioinformatics on Other Platforms?
Biostars is a great community, basically a bioinformatics-focused version of stackoverflow.
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Good resource to learn coding for molecular biology? Or places where I can access real data sets for analysis and practice?
Go here: https://www.biostars.org/
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Is there a forum for clinical informatics that does what biostars does for bioinformatics?
Biostars (https://www.biostars.org/) Q and A forum for questions about bioinformatic tasks like alignment, differential expression analysis, etc., organized in a vaguely stack overflow like way.
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Demoralized and dejected, the job market only seems to be getting worse.
Other place to get suggestions and padding for your Git repo would be to look at questions on boards like BioStars or StackExchange Implement, test, push, and comment with your solution. Make sure you all follow proper coding conventions too. Folks not only want the right answer they want to understand how it's done
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first stop codon
also consider posting bioinformatics questions over at https://www.biostars.org/ instead of reddit
- Does anyone know of a repository for actual genetic data?
- Ask HN: HN, but for Scientists?
- Where do Data Analyst and Data Science ask question most of the time (except StackOverflow and StackExchange)?
- Scientists Are Finding Fungi in Cancerous Tumors
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Ask HN: Any open source stack exchange clone
In the bioinformatics sphere there is this MIT-licensed Stack Exchange clone: https://github.com/ialbert/biostar-central
What are some alternatives?
When comparing bwa and biostar-central you can also consider the following projects:
foldseek - Foldseek enables fast and sensitive comparisons of large structure sets.
htslib - C library for high-throughput sequencing data formats
slivar - genetic variant expressions, annotation, and filtering for great good.
qpixel - Q&A-based community knowledge-sharing software
MethylDackel - A (mostly) universal methylation extractor for BS-seq experiments.
sra-tools - SRA Tools
Lobsters - Computing-focused community centered around link aggregation and discussion
bowtie - An ultrafast memory-efficient short read aligner
spades - SPAdes Genome Assembler
question2answer - Question2Answer is a free and open source platform for Q&A sites, running on PHP/MySQL.