biotite vs Clairvoyante

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biotite		Clairvoyante
	Project
2	Mentions	1
557	Stars	172
1.3%	Growth	-
9.0	Activity	0.0
3 days ago	Latest Commit	4 months ago
Python	Language	Python
BSD 3-clause "New" or "Revised" License	License	BSD 3-clause "New" or "Revised" License

The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

biotite

Posts with mentions or reviews of biotite. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-04-28.

Journey into bioinformatics
2 projects | /r/bioinformatics | 28 Apr 2021

For bioinformatics in Python, the BioPython library (https://biopython.org/) is commonly used. An alternative to this package is Biotite (https://www.biotite-python.org/), a package I am maintaining.
What bioinformatics software can i give my contribute?
1 project | /r/bioinformatics | 28 Apr 2021

If you like programming in Python, you could contribute to Biotite (https://www.biotite-python.org/). You may have a look at the open issues at https://github.com/biotite-dev/biotite/issues or the projects at https://github.com/biotite-dev/biotite/projects. If you are interested in a project, you can get in contact via Mail or our Discord channel (https://discord.gg/cUjDguF).

Clairvoyante

Posts with mentions or reviews of Clairvoyante. We have used some of these posts to build our list of alternatives and similar projects.

Installing packages for python2 with pip when they're already installed for python3
1 project | /r/learnpython | 29 Jun 2021

Hi! This might be a dumb question, but I am stuck at this problem. I am using Ubuntu 20.04 with Anaconda and I have both Python 2.7 and 3.7 on my system. I am trying to use this tool: https://github.com/aquaskyline/Clairvoyante but I am running into problems that there are packages, such as numpy and intervaltree that are installed for python3 but not for python2. When I run a python2 script that requires this package, I am getting errors like

What are some alternatives?

When comparing biotite and Clairvoyante you can also consider the following projects:

Biopython - Official git repository for Biopython (originally converted from CVS)

dance - DANCE: a deep learning library and benchmark platform for single-cell analysis

3DFI - The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.

pepper - PEPPER-Margin-DeepVariant

seqtk - Toolkit for processing sequences in FASTA/Q formats

OpenChem - OpenChem: Deep Learning toolkit for Computational Chemistry and Drug Design Research

CNApy - An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

dash-cytoscape - Interactive network visualization in Python and Dash, powered by Cytoscape.js

metaGEM - :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data